Package si.ijs.kt.clus.main.settings

Class Settings

java.lang.Object

si.ijs.kt.clus.main.settings.Settings

All Implemented Interfaces:

Serializable

public class Settings
extends Object
implements Serializable

All the settings. Includes the command line parameters as boolean class attributes. The settings file attributes are included by get* methods.

Author:

User

See Also:

• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
static final long	SERIAL_VERSION_ID
static final long	serialVersionUID

Constructor Summary

Constructors

Constructor	Description
Settings()

Method Summary

Modifier and Type	Method	Description
SettingsAttribute	getAttribute()
SettingsBeamSearch	getBeamSearch()
SettingsConstraints	getConstraints()
SettingsData	getData()
static Settings	getDefaultSettings()
SettingsEnsemble	getEnsemble()
SettingsExhaustiveSearch	getExhaustiveSearch()
SettingsExperimental	getExperimental()
SettingsGeneral	getGeneral()
SettingsGeneric	getGeneric()
SettingsHMLC	getHMLC()
SettingsHMTR	getHMTR()
SettingsILevelC	getILevelC()
SettingsKNN	getKNN()
SettingsKNNTree	getKNNTree()
SettingsMLC	getMLC()
SettingsModel	getModel()
SettingsNominal	getNominal()
SettingsOptionTree	getOptionTree()
SettingsOutput	getOutput()
SettingsPhylogeny	getPhylogeny()
SettingsRelief	getRelief()
SettingsRules	getRules()
Enumeration<INIFileNode>	getSectionsIterator()
SettingsSIT	getSIT()
SettingsSSL	getSSL()
SettingsTimeSeries	getTimeSeries()
SettingsTree	getTree()
void	initialize(CMDLineArgs cargs, boolean loads)
void	process(CMDLineArgs cargs)
void	show(PrintWriter where)
void	update(ClusSchema schema)
void	updateDisabledSettings()
void	updateTarget(ClusSchema schema)
void	validateSettings(ClusSchema schema)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

SERIAL_VERSION_ID

public static final long SERIAL_VERSION_ID

See Also:

• Constant Field Values

serialVersionUID

public static final long serialVersionUID

See Also:

• Constant Field Values

Constructor Details

Settings

public Settings()

Method Details

getSectionsIterator

public Enumeration<INIFileNode> getSectionsIterator()

getGeneric

public SettingsGeneric getGeneric()

getGeneral

public SettingsGeneral getGeneral()

getData

public SettingsData getData()

getAttribute

public SettingsAttribute getAttribute()

getConstraints

public SettingsConstraints getConstraints()

getOutput

public SettingsOutput getOutput()

getNominal

public SettingsNominal getNominal()

getModel

public SettingsModel getModel()

getTree

public SettingsTree getTree()

getRules

public SettingsRules getRules()

getMLC

public SettingsMLC getMLC()

getHMLC

public SettingsHMLC getHMLC()

getHMTR

public SettingsHMTR getHMTR()

getILevelC

public SettingsILevelC getILevelC()

getBeamSearch

public SettingsBeamSearch getBeamSearch()

getExhaustiveSearch

public SettingsExhaustiveSearch getExhaustiveSearch()

getTimeSeries

public SettingsTimeSeries getTimeSeries()

getPhylogeny

public SettingsPhylogeny getPhylogeny()

getRelief

public SettingsRelief getRelief()

getEnsemble

public SettingsEnsemble getEnsemble()

getKNN

public SettingsKNN getKNN()

getKNNTree

public SettingsKNNTree getKNNTree()

getOptionTree

public SettingsOptionTree getOptionTree()

getExperimental

public SettingsExperimental getExperimental()

getSIT

public SettingsSIT getSIT()

getSSL

public SettingsSSL getSSL()

updateTarget

public void updateTarget(ClusSchema schema)

initialize

public void initialize(CMDLineArgs cargs,
 boolean loads)
                throws IOException

Throws:

IOException

validateSettings

public void validateSettings(ClusSchema schema)

process

public void process(CMDLineArgs cargs)

update

public void update(ClusSchema schema)

updateDisabledSettings

public void updateDisabledSettings()

show

public void show(PrintWriter where)
          throws IOException

Throws:

IOException

getDefaultSettings

public static Settings getDefaultSettings()